Protein Modeling Guide

Overview

Learn about protein structure prediction and generation. Protein modeling support is available through modalities.protein and extensions.protein, with geometric models for point clouds and graphs.

• Protein sequence encoding
• Structure prediction models
• SE(3) equivariant architectures
• Protein folding with generative models

Related Documentation

• Protein Extensions
• Geometric Models
• Extensions Guide

Key Concepts

Sequence Representation

Amino acid sequences and their embeddings.

Structure Prediction

Predicting 3D coordinates from sequences.

Equivariance

SE(3) equivariant operations for proper geometric handling.